Details for gene set GOBP_REGULATION_OF_LIPOPOLYSACCHARIDE_MEDIATED_SIGNALING

Table: GSEA Results Summary

Dataset	Breast.Breast.cls #Breast_30-39_versus_Breast_70-79.Breast.cls #Breast_30-39_versus_Breast_70-79_repos
Phenotype	Breast.cls#Breast_30-39_versus_Breast_70-79_repos
Upregulated in class	Breast_70-79
GeneSet	GOBP_REGULATION_OF_LIPOPOLYSACCHARIDE_MEDIATED_SIGNALING_PATHWAY
Enrichment Score (ES)	-0.4322638
Normalized Enrichment Score (NES)	-1.1666663
Nominal p-value	0.27272728
FDR q-value	1.0
FWER p-Value	0.999

Table: GSEA details [plain text format]
	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	TRIM5	NA	3705	0.384	0.0311	No
2	CD180	NA	9512	0.252	-0.0102	No
3	CACTIN	NA	11008	0.229	0.0214	No
4	PRKCA	NA	11877	0.216	0.0613	No
5	SIGIRR	NA	15603	0.166	0.0359	No
6	LTF	NA	18426	0.131	0.0180	No
7	TRAF6	NA	19945	0.112	0.0191	No
8	LILRA2	NA	21352	0.095	0.0180	No
9	PRDX2	NA	23632	0.071	-0.0056	No
10	CARD8	NA	26486	0.043	-0.0467	No
11	NFKBIL1	NA	26505	0.043	-0.0359	No
12	SCIMP	NA	27374	0.037	-0.0423	No
13	ACOD1	NA	33605	0.004	-0.1555	No
14	DEFB114	NA	37444	0.000	-0.2259	No
15	LY86	NA	39849	-0.010	-0.2674	No
16	LACRT	NA	40405	-0.017	-0.2733	No
17	CD36	NA	41299	-0.027	-0.2826	No
18	SASH1	NA	42430	-0.041	-0.2928	No
19	BMP6	NA	50040	-0.167	-0.3891	Yes
20	TRIB1	NA	51118	-0.192	-0.3592	Yes
21	CX3CL1	NA	51304	-0.197	-0.3118	Yes
22	CD55	NA	52968	-0.243	-0.2795	Yes
23	LY96	NA	53652	-0.287	-0.2179	Yes
24	CARD16	NA	54349	-0.410	-0.1248	Yes
25	TNFAIP3	NA	54500	-0.501	0.0017	Yes

Fig 3: GOBP_REGULATION_OF_LIPOPOLYSACCHARIDE_MEDIATED_SIGNALING_PATHWAY: Random ES distribution
Gene set null distribution of ES for GOBP_REGULATION_OF_LIPOPOLYSACCHARIDE_MEDIATED_SIGNALING_PATHWAY