Details for gene set GOBP_VACUOLAR

Table: GSEA Results Summary

Dataset	Breast.Breast.cls #Breast_30-39_versus_Breast_70-79.Breast.cls #Breast_30-39_versus_Breast_70-79_repos
Phenotype	Breast.cls#Breast_30-39_versus_Breast_70-79_repos
Upregulated in class	Breast_30-39
GeneSet	GOBP_VACUOLAR_TRANSPORT
Enrichment Score (ES)	0.62576205
Normalized Enrichment Score (NES)	1.7411283
Nominal p-value	0.005524862
FDR q-value	0.5293706
FWER p-Value	0.523

Table: GSEA details [plain text format]
	SYMBOL	TITLE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	ATP13A2	NA	188	0.681	0.0132	Yes
2	VPS33A	NA	335	0.629	0.0259	Yes
3	VPS18	NA	571	0.582	0.0358	Yes
4	AP3M1	NA	623	0.573	0.0489	Yes
5	NCOA4	NA	773	0.553	0.0597	Yes
6	VPS13D	NA	831	0.548	0.0721	Yes
7	MON1B	NA	898	0.542	0.0841	Yes
8	VPS36	NA	937	0.536	0.0965	Yes
9	KIF13A	NA	942	0.536	0.1096	Yes
10	TGFBRAP1	NA	976	0.532	0.1220	Yes
11	ALS2	NA	1136	0.518	0.1317	Yes
12	SORT1	NA	1238	0.509	0.1423	Yes
13	TRAK1	NA	1465	0.491	0.1502	Yes
14	AP1G1	NA	1483	0.489	0.1618	Yes
15	ANKFY1	NA	1678	0.477	0.1700	Yes
16	VPS13A	NA	1683	0.477	0.1815	Yes
17	CACNG8	NA	1776	0.469	0.1913	Yes
18	PIK3R4	NA	1840	0.466	0.2016	Yes
19	NAGPA	NA	2030	0.454	0.2092	Yes
20	HGSNAT	NA	2086	0.451	0.2193	Yes
21	IGF2R	NA	2327	0.439	0.2256	Yes
22	VPS4B	NA	2362	0.438	0.2357	Yes
23	VPS39	NA	2386	0.436	0.2459	Yes
24	ZFYVE16	NA	2596	0.427	0.2525	Yes
25	VTI1B	NA	2653	0.424	0.2619	Yes
26	GNPTAB	NA	2681	0.423	0.2717	Yes
27	AP3D1	NA	2825	0.416	0.2793	Yes
28	SNX16	NA	2839	0.416	0.2892	Yes
29	TMEM50B	NA	2913	0.413	0.2980	Yes
30	MTM1	NA	2916	0.412	0.3081	Yes
31	RBSN	NA	3041	0.408	0.3158	Yes
32	VPS11	NA	3042	0.408	0.3257	Yes
33	VPS54	NA	3178	0.403	0.3331	Yes
34	VTA1	NA	3200	0.402	0.3426	Yes
35	SCARB2	NA	3276	0.399	0.3510	Yes
36	STAM	NA	3298	0.398	0.3603	Yes
37	VPS41	NA	3371	0.396	0.3687	Yes
38	VPS35	NA	3595	0.388	0.3741	Yes
39	LRP1	NA	3758	0.382	0.3804	Yes
40	HOOK2	NA	3802	0.380	0.3889	Yes
41	CLEC16A	NA	3849	0.378	0.3974	Yes
42	VAMP7	NA	3864	0.378	0.4063	Yes
43	TMEM106B	NA	3997	0.374	0.4131	Yes
44	CHMP1B	NA	4091	0.371	0.4205	Yes
45	VPS53	NA	4159	0.369	0.4283	Yes
46	HGS	NA	4170	0.369	0.4371	Yes
47	SNX27	NA	4474	0.360	0.4404	Yes
48	VPS4A	NA	4481	0.360	0.4491	Yes
49	AP3B1	NA	4493	0.360	0.4576	Yes
50	VPS13C	NA	4714	0.353	0.4622	Yes
51	VPS52	NA	4991	0.346	0.4656	Yes
52	EPG5	NA	5021	0.345	0.4735	Yes
53	VPS16	NA	5144	0.342	0.4797	Yes
54	NDFIP2	NA	5208	0.340	0.4868	Yes
55	SORL1	NA	5570	0.331	0.4883	Yes
56	GOSR2	NA	5659	0.329	0.4947	Yes
57	GRN	NA	5685	0.328	0.5023	Yes
58	GGA3	NA	5841	0.324	0.5073	Yes
59	CHMP7	NA	5923	0.322	0.5137	Yes
60	NDFIP1	NA	6054	0.319	0.5192	Yes
61	CHMP3	NA	6062	0.319	0.5268	Yes
62	TRAK2	NA	6152	0.317	0.5330	Yes
63	ATG14	NA	6374	0.312	0.5366	Yes
64	HOOK3	NA	6481	0.310	0.5422	Yes
65	UBXN6	NA	6837	0.302	0.5431	Yes
66	SCYL2	NA	6851	0.302	0.5502	Yes
67	GCC2	NA	6886	0.301	0.5570	Yes
68	PINK1	NA	7180	0.296	0.5588	Yes
69	EHD3	NA	7201	0.295	0.5657	Yes
70	FAM160A2	NA	7241	0.294	0.5722	Yes
71	SPTBN5	NA	7384	0.291	0.5767	Yes
72	BECN1	NA	7659	0.286	0.5786	Yes
73	VPS51	NA	7737	0.284	0.5842	Yes
74	VPS37B	NA	7744	0.284	0.5910	Yes
75	M6PR	NA	8553	0.269	0.5828	Yes
76	SLC46A3	NA	8707	0.267	0.5865	Yes
77	RAB12	NA	8709	0.267	0.5930	Yes
78	CCDC91	NA	8717	0.266	0.5994	Yes
79	USE1	NA	8738	0.266	0.6055	Yes
80	PSAP	NA	8774	0.265	0.6114	Yes
81	ATP6V0D1	NA	8790	0.265	0.6176	Yes
82	BIN1	NA	9229	0.257	0.6158	Yes
83	CHMP1A	NA	9313	0.256	0.6206	Yes
84	VIPAS39	NA	9480	0.253	0.6237	Yes
85	SNAPIN	NA	9815	0.247	0.6236	Yes
86	CHMP4C	NA	10232	0.241	0.6219	Yes
87	AP1G2	NA	10565	0.235	0.6215	Yes
88	RNF215	NA	10826	0.231	0.6224	Yes
89	ARSB	NA	10951	0.230	0.6258	Yes
90	GAK	NA	11664	0.219	0.6180	No
91	LAMP1	NA	12298	0.211	0.6116	No
92	CDX2	NA	12825	0.203	0.6069	No
93	MGRN1	NA	13296	0.196	0.6031	No
94	HOOK1	NA	13374	0.195	0.6064	No
95	VCP	NA	13405	0.195	0.6106	No
96	SMURF1	NA	14194	0.184	0.6007	No
97	ATP6V0D2	NA	14824	0.176	0.5934	No
98	MON1A	NA	15112	0.172	0.5924	No
99	CHMP6	NA	15167	0.172	0.5956	No
100	AP4M1	NA	15375	0.169	0.5959	No
101	DTX3L	NA	15470	0.168	0.5983	No
102	LRRK2	NA	15895	0.163	0.5945	No
103	SNF8	NA	16020	0.161	0.5962	No
104	RAB7B	NA	16457	0.156	0.5920	No
105	HMGXB4	NA	16535	0.155	0.5943	No
106	LAMP2	NA	17036	0.149	0.5888	No
107	CLU	NA	17160	0.147	0.5901	No
108	AKTIP	NA	17403	0.144	0.5892	No
109	VPS25	NA	17561	0.142	0.5898	No
110	LEPROT	NA	17839	0.139	0.5881	No
111	CLN3	NA	18819	0.126	0.5732	No
112	TSG101	NA	19066	0.123	0.5717	No
113	CHMP4A	NA	20050	0.111	0.5564	No
114	BECN2	NA	20324	0.107	0.5540	No
115	NEDD4	NA	20989	0.100	0.5442	No
116	TMEM50A	NA	22226	0.086	0.5236	No
117	RNF157	NA	22726	0.080	0.5164	No
118	CACNG4	NA	23131	0.076	0.5108	No
119	GPRASP1	NA	23247	0.075	0.5106	No
120	DENND3	NA	23519	0.072	0.5073	No
121	VTI1A	NA	23852	0.068	0.5029	No
122	NPC1	NA	23944	0.068	0.5029	No
123	MVB12A	NA	24209	0.065	0.4996	No
124	CHMP4B	NA	25030	0.057	0.4860	No
125	VPS28	NA	28859	0.027	0.4163	No
126	LYST	NA	29633	0.022	0.4027	No
127	RAB7A	NA	30138	0.020	0.3939	No
128	SLC15A4	NA	31228	0.014	0.3742	No
129	CHMP2B	NA	33749	0.003	0.3280	No
130	HSPA1A	NA	39308	-0.003	0.2260	No
131	HSPA8	NA	39913	-0.011	0.2151	No
132	VPS37D	NA	41041	-0.024	0.1950	No
133	PCDHGA3	NA	41491	-0.029	0.1875	No
134	PCSK9	NA	42943	-0.048	0.1620	No
135	CHMP5	NA	43360	-0.053	0.1557	No
136	ADRB2	NA	43362	-0.053	0.1570	No
137	CACNG7	NA	43846	-0.060	0.1496	No
138	CHMP2A	NA	44709	-0.072	0.1355	No
139	CACNG2	NA	44804	-0.073	0.1356	No
140	C9orf72	NA	44870	-0.074	0.1362	No
141	VPS37C	NA	44935	-0.075	0.1369	No
142	CACNG5	NA	45981	-0.091	0.1199	No
143	STX8	NA	46000	-0.091	0.1218	No
144	RILP	NA	46105	-0.093	0.1221	No
145	LAPTM5	NA	46576	-0.100	0.1160	No
146	WASH3P	NA	46600	-0.101	0.1180	No
147	ARF1	NA	46706	-0.102	0.1186	No
148	VPS37A	NA	46974	-0.107	0.1163	No
149	RHOB	NA	51638	-0.206	0.0357	No
150	LEPROTL1	NA	52015	-0.215	0.0340	No
151	CACNG3	NA	53420	-0.269	0.0148	No
152	CHMP4BP1	NA	53453	-0.272	0.0209	No