ADEIP: Age-dependent expression and immune profiles platform
ADEIP provided the differences of gene expression and cell ratios among different ages and genders. ADEIP includes data on a much larger scale (16704 samples, 54592 genes, 30 tissues, 22 cell types, 34 types of immune function, 2 gender) than previous databases.
http://geneyun.net/ADEIPcircRIP: an accurate tool for identifying circRNA–RBP interactions
We provide an accurate and sensitive tool, circRIP, to systematically identify RBP and circRNA interactions from RIP-Seq and eCLIP data, which can significantly benefit the research community for the functional exploration of circRNAs.
https://github.com/bioinfolabwhu/circRIPCSCD2: Integrated interactional database of cancer-specific circular RNAs
An updated database for investigating the potential function of cancer-specific circRNAs with significant larger number of samples and circRNAs, as well as new functions to better interpret the functions of circRNAs, including the interactions of circRNA-micoRNA and circRNA-RBP, full length of circRNAs and the translational ability of circRNAs.
http://geneyun.net/CSCD2Detection of cancer-specific alternative splicing in circRNA
Detect and compare alternative splicing events in circRNA across different samples and conditions. More suitable for circRNA-Seq (total RNA and rRNA-depleted library, with RNase R digestion).
http://geneyun.net/CircSpliceCancer-specific circRNA database
Detect cancer-specific circRNAs in 19 cancers, predict the binding sites for microRNA, RNA binding protein, and open reading frame, and detect the alternative splicing of host genes.
http://geneyun.net/CSCDTissue-specific circRNA database
Identify and characterize tissue-specific circRNAs for more than 16 tissues from human and mouse, predict the binding sites of microRNA and RNA binding protein.
http://geneyun.net/TSCDVisualization m6A database
Identify and characterize cell lines-associated m6As and develop a visualization and comparable interface for regulation and function research of m6A.
http://geneyun.net:8080/CVm6ANeonatal jaundice gene and drug database
Through artificial literature mining for neonatal jaundice, we construct a manually curated database for neonatal jaundice gene and drug, supporting for the neonatal jaundice research.
http://geneyun.net/NJDBDatabase of acute myeloid leukemia-associated lncRNAs
Detect and characterize lncRNAs in acute myeloid leukemia and classify lncRNAs according to the potential functions
http://geneyun.net/lncAMLdbDatabase of heart development-associated lncRNAs
Identify and characterize differential expressed lncRNAs between adult and fetal heart
http://geneyun.net/HeartA visualization and exploration tool for circRNA
Visualize and compare circRNAs across samples and predict the binding sites of microRNA and RNA binding proteins, supporting for function research of circRNA
http://geneyun.net/CircView