Detection of cancer-specific alternative splicing in circRNA

Detect and compare alternative splicing events in circRNA across different samples and conditions. More suitable for circRNA-Seq (total RNA and rRNA-depleted library, with RNase R digestion).

http://geneyun.net/CircSplice
Cancer-specific circRNA database

Detect cancer-specific circRNAs in 19 cancers, predict the binding sites for microRNA, RNA binding protein, and open reading frame, and detect the alternative splicing of host genes.

http://geneyun.net/CSCD
Tissue-specific circRNA database

Identify and characterize tissue-specific circRNAs for more than 16 tissues from human and mouse, predict the binding sites of microRNA and RNA binding protein.

http://geneyun.net/TSCD
Visualization m6A database

Identify and characterize cell lines-associated m6As and develop a visualization and comparable interface for regulation and function research of m6A.

http://geneyun.net:8080/CVm6A
Neonatal jaundice gene and drug database

Through artificial literature mining for neonatal jaundice, we construct a manually curated database for neonatal jaundice gene and drug, supporting for the neonatal jaundice research.

http://geneyun.net/NJDB
Database of acute myeloid leukemia-associated lncRNAs

Detect and characterize lncRNAs in acute myeloid leukemia and classify lncRNAs according to the potential functions

http://geneyun.net/lncAMLdb
Database of heart development-associated lncRNAs

Identify and characterize differential expressed lncRNAs between adult and fetal heart

http://geneyun.net/Heart
A visualization and exploration tool for circRNA

Visualize and compare circRNAs across samples and predict the binding sites of microRNA and RNA binding proteins, supporting for function research of circRNA

http://geneyun.net/CircView

 

 

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