Selected works:

Chen W#, Chen X#, Yao L#, Feng J, Li F, Shan Y, Ren L, Zhuo C, Feng M, Zhong S*,He C*. A global view of altered ligand-receptor interactions in bone marrow aging based on single-cell sequencing. Comput Struct Biotechnol J. 2024 Jun 20;23:2754-2762.

Dong X#, Chen K#, Chen W#, Wang J, Chang L, Deng J, Wei L, Han L*, Huang C*, He C*. circRIP: an accurate tool for identifying circRNA-RBP interactions, Briefings in Bioinformatics. 2022 Jun 1:bbac186.

Li J#, Chen K#, Dong X#, Xu Y, Sun Q, Wang H, Chen Z, Liu C, Liu R, Yang Z, Mei X, Zhang R, Chang L, Tian Z, Chen J, Liang K*, He C*, Luo M*. YTHDF1 promotes mRNA degradation via YTHDF1-AGO2 interaction and phase separation. Cell Proliferation. 2022 Jan 55(1):e13157.

Feng J#, Chen W#, Dong X#, Wang J, Mei X, Deng J, Yang S, Zhuo C, Huang X, Shao L, Zhang R, Guo J, Ma R, Liu J, Li F, Wu Y*, Han L*, He C*. CSCD 2.0: An integrated interactional database of cancer-specific circular RNA, Nucleic Acids Research. 2021 Sep 22:gkab830.

Liu X#, Chen W#, Fang Y#, Yang S, Chang L, Chen X, Ye H, Tang X, Zhong S, Zhang W, Dong Z*, Han L*, He C*. ADEIP: an integrated platform of age-dependent expression and immune profiles across human tissues. Briefings in Bioinformatics. 2021 Jul 13:bbab274.

Shao L#, Jiang GT#, Yang XL, Zeng ML, Cheng JJ, Kong S, Dong X, Chen TX, Han S, Yin J, Liu WH, He XH, He C*, Peng BW*. Silencing of circIgf1r plays a protective role in neuronal injury via regulating astrocyte polarization during epilepsy. FASEB J. 2021 Feb.

Xu X#, Zhang J#, Tian Y#, Gao Y#, Dong X, Chen W, Yuan X, Yin W, Xu J, Chen K*, He C*, Wei L*. CircRNA inhibits DNA damage repair by interacting with host gene. Molecular Cancer. 2020 Aug 24;19(1):128. doi: 10.1186/s12943-020-01246-x.

Xiao S#, Cao S#, Huang Q#, Xia L#, Deng M, Yang M, Jia G, Liu X, Shi J, Wang W, Li Y, Liu S, Zhu H, Tan K, Luo Q, Zhong M*, He C*, Xia L*. The RNA N(6)-methyladenosine modification landscape of human fetal tissues. Nature Cell Biology. 2019 Apr 29. doi: 10.1038/s41556-019-0315-4

Feng J*#, Chen K#, Dong X#, Xu X, Jin Y, Zhang X, Chen W, Han Y, Shao L, Gao Y, He C*. Genome-wide identification of cancer-specific alternative splicing in circRNA. Molecular Cancer. 2019 Mar 8; 18(1):35. doi: 10.1186/s12943-019-0996-0.

Han Y#, Feng J#, Xia L#, Dong X, Zhang X, Zhang S, Miao Y, Xu Q, Xiao S, Zuo Z, Xia L*, He C*. CVm6A: A Visualization and Exploration Database for m6As in Cell Lines. Cells. 2019 Feb 17; 8(2). pii: E168. doi: 10.3390/cells8020168.

Feng J#, Xiang Y#, Xia S#, Liu H, Wang J, Ozguc F, Lei L, Kong R, Diao L, He C*, Han L*. CircView: a visualization and exploration tool for circular RNAs. Briefings in Bioinformatics. 2018 Nov 27. doi: 10.1093/bib/bbx070.

Lei L#, Xia S#, Liu D#, Li X#, Feng J, Zhu Y, Hu J, Xia L, Guo L, Chen F, Cheng H, Chen K, Hu H, Chen X, Li F, Zhong S, Mittal N, Yang G, Qian Z, Han L*, He C*. Genome-wide characterization of lncRNAs in acute myeloid leukemia. Briefings in Bioinformatics. 2018 Jun 20. doi: 10.1093/bib/bbx007.

Xia S#, Feng J#, Chen K#, Ma Y, Gong J, Cai F, Jin Y, Gao Y, Xia L, Chang H, Wei L, Han L*, He C*. CSCD: A database for cancer-specific circular RNAs. Nucleic Acids Research. 2018 Jan 4. doi: 10.1093/nar/gkx863. ESI高被引

Xia S#, Feng J#, Lei L, Hu J, Xia L, Wang J, Xiang Y, Liu L, Zhong S, Han L*, He C*. Comprehensive characterization of tissue-specific circular RNAs in the human and mouse genomes. Briefings in Bioinformatics. 2017 Nov 1. doi: 10.1093/bib/bbw081. ESI高被引

He C*#, Hu H#, Wilson KD#, Wu H, Feng J, Xia S, Churko J, Qu K, Chang HY, Wu JC*. Systematic Characterization of Long Non-Coding RNAs Reveals the Contrasting Coordination of Cis- and Trans- Molecular Regulation in Human Fetal and Adult Heart. Circulation Cardiovascular Genetics. 2016 Apr. pii: CIRCGENETICS.115.001264.

Li Z#, Herold T#, He C#, Valk PJ, Chen P, Jurinovic V, Mansmann U, Radmacher MD, Maharry KS, Sun M, Yang X, Huang H, Jiang X, Sauerland MC, Büchner T, Hiddemann W, Elkahloun A, Neilly MB, Zhang Y, Larson RA, Le Beau MM, Caligiuri MA, Döhner K, Bullinger L, Liu PP, Delwel R, Marcucci G, Lowenberg B, Bloomfield CD, Rowley JD, Bohlander SK, Chen J*. Identification of a 24-gene prognostic signature that improves the European LeukemiaNet risk classification of acute myeloid leukemia: an international collaborative study. Journal of Clinical Oncology. 2013 Mar 20;31(9):1172-81. doi: 10.1200/JCO.2012.44.3184.

He C#, Li Z#, Chen P#, Huang H, Hurst LD*, Chen J*. Young intragenic miRNAs are less coexpressed with host genes than old ones: implications of miRNA-host gene coevolution. Nucleic Acids Research. 2012 May;40(9):4002-12. doi: 10.1093/nar/gkr1312.

Mi S#, Li Z#, Chen P#,He C#, Cao D, Elkahloun A, Lu J, Pelloso LA, Wunderlich M, Huang H, Luo RT, Sun M, He M, Neilly MB, Zeleznik-Le NJ, Thirman MJ, Mulloy JC, Liu PP, Rowley JD*, Chen J*. Aberrant overexpression and function of the miR-17-92 cluster in MLL-rearranged acute leukemia. Proc Natl Acad Sci U S A. 2010 Feb 23;107(8):3710-5. doi: 10.1073/pnas.0914900107.

He C#, Zhou F, Zuo Z, Cheng H*, Zhou R*. A global view of cancer-specific transcript variants by subtractive transcriptome-wide analysis. PLoS One. 2009;4(3):e4732. doi: 10.1371/journal.pone.0004732.

He C#, Cheng H*, Zhou R*. GATA family of transcription factors of vertebrates: phylogenetics and chromosomal synteny. Journal of Biosciences. 2007 Dec;32(7):1273-80.

He C#, Zuo Z, Chen H, Zhang L, Zhou F, Cheng H*, Zhou R*. Genome-wide detection of testis- and testicular cancer-specific alternative splicing. Carcinogenesis. 2007 Dec;28(12):2484-90.